Detailed information of SNP:
|
SNP ID:
sf0907517119(Gbrowse)
Chromosome: chr09 Position: 7517119 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 72.17% | 27.83% |
| All Indica | 793 | 63.81% | 36.19% |
| All Japonica | 496 | 82.46% | 17.54% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 372 | 55.38% | 44.62% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 210 | 51.43% | 48.57% |
| Temperate Japonica | 334 | 90.72% | 9.28% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907517119 | G->A | INTERGENIC | None |