Detailed information of SNP:
|
SNP ID:
sf0907520059(Gbrowse)
Chromosome: chr09 Position: 7520059 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 63.81% | 36.19% |
| All Indica | 794 | 49.24% | 50.76% |
| All Japonica | 497 | 81.89% | 18.11% |
| Aus | 52 | 80.77% | 19.23% |
| Indica I | 373 | 37.00% | 63.00% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907520059 | C->G | LOC_Os09g13040(LOC_Os09g13040.1) | Non-Synonymous SNP |