Detailed information of SNP:
|
SNP ID:
sf0907576141(Gbrowse)
Chromosome: chr09 Position: 7576141 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1373 | 96.87% | 3.13% |
| All Indica | 757 | 95.11% | 4.89% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 354 | 96.61% | 3.39% |
| Indica II | 204 | 95.10% | 4.90% |
| Indica Intermediate | 199 | 92.46% | 7.54% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907576141 | A->G | LOC_Os09g13150(LOC_Os09g13150.1) | Non-Synonymous SNP |