Detailed information of SNP:
|
SNP ID:
sf0907576928(Gbrowse)
Chromosome: chr09 Position: 7576928 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 92.68% | 7.32% |
| All Indica | 794 | 97.86% | 2.14% |
| All Japonica | 490 | 83.88% | 16.12% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 96.50% | 3.50% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 91.54% | 8.46% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 66 | 51.52% | 48.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907576928 | C->A | LOC_Os09g13150(LOC_Os09g13150.1) | Non-Synonymous SNP |