Detailed information of SNP:
|
SNP ID:
sf0907577649(Gbrowse)
Chromosome: chr09 Position: 7577649 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 90.04% | 9.96% |
| All Indica | 796 | 95.10% | 4.90% |
| All Japonica | 496 | 81.25% | 18.75% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 334 | 89.52% | 10.48% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907577649 | C->A | LOC_Os09g13150(LOC_Os09g13150.1) | Non-Synonymous SNP |