Detailed information of SNP:
|
SNP ID:
sf0907582714(Gbrowse)
Chromosome: chr09 Position: 7582714 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 89.08% | 10.92% |
| All Indica | 794 | 92.70% | 7.30% |
| All Japonica | 494 | 82.19% | 17.81% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 333 | 90.09% | 9.91% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907582714 | C->T | LOC_Os09g13160(LOC_Os09g13160.1) | Synonymous |