Detailed information of SNP:
|
SNP ID:
sf0907585801(Gbrowse)
Chromosome: chr09 Position: 7585801 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 95.03% | 4.97% |
| All Indica | 791 | 93.30% | 6.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 371 | 91.11% | 8.89% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907585801 | A->G | LOC_Os09g13170(LOC_Os09g13170.1) | INTRON |