Detailed information of SNP:
|
SNP ID:
sf0907601051(Gbrowse)
Chromosome: chr09 Position: 7601051 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1310 | 67.48% | 32.52% |
| All Indica | 703 | 49.08% | 50.92% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 57 | 31.58% | 68.42% |
| Indica I | 327 | 57.49% | 42.51% |
| Indica II | 192 | 36.98% | 63.02% |
| Indica Intermediate | 184 | 46.74% | 53.26% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907601051 | C->T | INTERGENIC | None |