Detailed information of SNP:
|
SNP ID:
sf0907658025(Gbrowse)
Chromosome: chr09 Position: 7658025 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 83.97% | 16.03% |
| All Indica | 795 | 89.31% | 10.69% |
| All Japonica | 493 | 76.88% | 23.12% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 85.48% | 14.52% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 332 | 87.65% | 12.35% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907658025 | C->T | LOC_Os09g13280(LOC_Os09g13280.1) | Synonymous |