Detailed information of SNP:
|
SNP ID:
sf0907666465(Gbrowse)
Chromosome: chr09 Position: 7666465 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 83.77% | 16.23% |
| All Indica | 788 | 93.91% | 6.09% |
| All Japonica | 495 | 65.05% | 34.95% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 207 | 97.10% | 2.90% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 333 | 67.87% | 32.13% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907666465 | G->C | INTERGENIC | None |