Detailed information of SNP:
|
SNP ID:
sf0907667817(Gbrowse)
Chromosome: chr09 Position: 7667817 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 94.88% | 5.12% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 464 | 85.34% | 14.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 305 | 80.00% | 20.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907667817 | C->G | INTERGENIC | None |