Detailed information of SNP:
|
SNP ID:
sf0907670668(Gbrowse)
Chromosome: chr09 Position: 7670668 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 87.67% | 12.33% |
| All Indica | 795 | 94.84% | 5.16% |
| All Japonica | 493 | 74.44% | 25.56% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 331 | 80.36% | 19.64% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907670668 | C->A | LOC_Os09g13300(LOC_Os09g13300.1) | INTRON |