Detailed information of SNP:
|
SNP ID:
sf0907671928(Gbrowse)
Chromosome: chr09 Position: 7671928 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 86.34% | 13.66% |
| All Indica | 782 | 92.33% | 7.67% |
| All Japonica | 493 | 77.89% | 22.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 88.77% | 11.23% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 332 | 89.16% | 10.84% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907671928 | C->T | LOC_Os09g13300(LOC_Os09g13300.1) | Synonymous |