Detailed information of SNP:
|
SNP ID:
sf0907677745(Gbrowse)
Chromosome: chr09 Position: 7677745 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 65.82% | 34.18% |
| All Indica | 764 | 51.18% | 48.82% |
| All Japonica | 491 | 92.46% | 7.54% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 358 | 53.35% | 46.65% |
| Indica II | 200 | 47.00% | 53.00% |
| Indica Intermediate | 206 | 51.46% | 48.54% |
| Temperate Japonica | 331 | 91.24% | 8.76% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907677745 | T->C | INTERGENIC | None |