Detailed information of SNP:
|
SNP ID:
sf0907679153(Gbrowse)
Chromosome: chr09 Position: 7679153 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 75.15% | 24.85% |
| All Indica | 754 | 63.93% | 36.07% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 63 | 33.33% | 66.67% |
| Indica I | 355 | 67.89% | 32.11% |
| Indica II | 204 | 57.84% | 42.16% |
| Indica Intermediate | 195 | 63.08% | 36.92% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907679153 | A->G | LOC_Os09g13320(LOC_Os09g13320.1) | Non-Synonymous SNP |