Detailed information of SNP:
|
SNP ID:
sf0907679610(Gbrowse)
Chromosome: chr09 Position: 7679610 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 91.51% | 8.49% |
| All Indica | 796 | 96.61% | 3.39% |
| All Japonica | 495 | 82.22% | 17.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 333 | 90.09% | 9.91% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907679610 | A->T | LOC_Os09g13320(LOC_Os09g13320.1) | INTRON |