Detailed information of SNP:
|
SNP ID:
sf0907724133(Gbrowse)
Chromosome: chr09 Position: 7724133 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 53.40% | 46.60% |
| All Indica | 781 | 80.54% | 19.46% |
| All Japonica | 496 | 7.86% | 92.14% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 363 | 78.24% | 21.76% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 207 | 77.78% | 22.22% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907724133 | A->C | INTERGENIC | None |