Detailed information of SNP:
|
SNP ID:
sf0907724198(Gbrowse)
Chromosome: chr09 Position: 7724198 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 52.60% | 47.40% |
| All Indica | 783 | 79.69% | 20.31% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 365 | 77.26% | 22.74% |
| Indica II | 210 | 85.71% | 14.29% |
| Indica Intermediate | 208 | 77.88% | 22.12% |
| Temperate Japonica | 335 | 10.15% | 89.85% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907724198 | C->T | INTERGENIC | None |