Detailed information of SNP:
|
SNP ID:
sf0907745322(Gbrowse)
Chromosome: chr09 Position: 7745322 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 58.25% | 41.75% |
| All Indica | 792 | 88.26% | 11.74% |
| All Japonica | 494 | 7.89% | 92.11% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 372 | 85.48% | 14.52% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 208 | 86.06% | 13.94% |
| Temperate Japonica | 332 | 10.84% | 89.16% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907745322 | T->C | INTERGENIC | None |