Detailed information of SNP:
|
SNP ID:
sf0907745354(Gbrowse)
Chromosome: chr09 Position: 7745354 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 57.68% | 42.32% |
| All Indica | 795 | 87.42% | 12.58% |
| All Japonica | 496 | 7.26% | 92.74% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 84.64% | 15.36% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 334 | 9.88% | 90.12% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907745354 | C->T | INTERGENIC | None |