Detailed information of SNP:
|
SNP ID:
sf0907748990(Gbrowse)
Chromosome: chr09 Position: 7748990 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 55.30% | 44.70% |
| All Indica | 797 | 36.39% | 63.61% |
| All Japonica | 495 | 91.31% | 8.69% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 41.87% | 58.13% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 209 | 42.11% | 57.89% |
| Temperate Japonica | 333 | 87.69% | 12.31% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907748990 | C->T | INTERGENIC | None |