Detailed information of SNP:
|
SNP ID:
sf0907749359(Gbrowse)
Chromosome: chr09 Position: 7749359 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 59.63% | 40.37% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 496 | 8.87% | 91.13% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 334 | 12.28% | 87.72% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907749359 | G->A | INTERGENIC | None |