Detailed information of SNP:
|
SNP ID:
sf0907754322(Gbrowse)
Chromosome: chr09 Position: 7754322 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 60.84% | 39.16% |
| All Indica | 797 | 90.09% | 9.91% |
| All Japonica | 489 | 10.22% | 89.78% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 327 | 14.07% | 85.93% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907754322 | T->A | LOC_Os09g13410(LOC_Os09g13410.1) | UTR_3_PRIME |