Detailed information of SNP:
|
SNP ID:
sf0907762143(Gbrowse)
Chromosome: chr09 Position: 7762143 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 60.18% | 39.82% |
| All Indica | 795 | 89.94% | 10.06% |
| All Japonica | 491 | 8.76% | 91.24% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 87.90% | 12.10% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 330 | 12.12% | 87.88% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907762143 | C->T | INTERGENIC | None |