Detailed information of SNP:
|
SNP ID:
sf0907768964(Gbrowse)
Chromosome: chr09 Position: 7768964 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 53.15% | 46.85% |
| All Indica | 795 | 19.37% | 80.63% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 371 | 18.06% | 81.94% |
| Indica II | 213 | 15.49% | 84.51% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907768964 | C->T | INTERGENIC | None |