Detailed information of SNP:
|
SNP ID:
sf0907769893(Gbrowse)
Chromosome: chr09 Position: 7769893 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 62.19% | 37.81% |
| All Indica | 792 | 91.29% | 8.71% |
| All Japonica | 488 | 10.45% | 89.55% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 368 | 90.49% | 9.51% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 329 | 13.07% | 86.93% |
| Tropical Japonica | 91 | 4.40% | 95.60% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907769893 | A->G | LOC_Os09g13430(LOC_Os09g13430.1) | Non-Synonymous SNP |