Detailed information of SNP:



SNP ID: sf0907775072(Gbrowse)

Chromosome: chr09

Position: 7775072
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1404 65.38% 34.62%
All Indica788 86.17% 13.83%
All Japonica494 43.32% 56.68%
Aus67 8.96% 91.04%
Indica I370 86.49% 13.51%
Indica II212 90.09% 9.91%
Indica Intermediate206 81.55% 18.45%
Temperate Japonica334 58.98% 41.02%
Tropical Japonica92 5.43% 94.57%
Japonica Intermediate68 17.65% 82.35%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 46.34% 53.66%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0907775072 A->C LOC_Os09g13440(LOC_Os09g13440.2) INTRON
sf0907775072 A->C LOC_Os09g13440(LOC_Os09g13440.1) INTRON