Detailed information of SNP:
|
SNP ID:
sf0907775072(Gbrowse)
Chromosome: chr09 Position: 7775072 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 65.38% | 34.62% |
| All Indica | 788 | 86.17% | 13.83% |
| All Japonica | 494 | 43.32% | 56.68% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 370 | 86.49% | 13.51% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 206 | 81.55% | 18.45% |
| Temperate Japonica | 334 | 58.98% | 41.02% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907775072 | A->C | LOC_Os09g13440(LOC_Os09g13440.2) | INTRON |
| sf0907775072 | A->C | LOC_Os09g13440(LOC_Os09g13440.1) | INTRON |