Detailed information of SNP:
|
SNP ID:
sf0907794079(Gbrowse)
Chromosome: chr09 Position: 7794079 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 84.03% | 15.97% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 468 | 57.48% | 42.52% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 308 | 38.64% | 61.36% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907794079 | G->C | INTERGENIC | None |