Detailed information of SNP:
|
SNP ID:
sf0907797696(Gbrowse)
Chromosome: chr09 Position: 7797696 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 86.32% | 13.68% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 490 | 65.51% | 34.49% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 328 | 51.83% | 48.17% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907797696 | G->A | LOC_Os09g13470(LOC_Os09g13470.1) | Non-Synonymous SNP |