Detailed information of SNP:
|
SNP ID:
sf0907840289(Gbrowse)
Chromosome: chr09 Position: 7840289 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.03% | 33.97% |
| All Indica | 799 | 75.47% | 24.53% |
| All Japonica | 497 | 52.52% | 47.48% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 72.54% | 27.46% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907840289 | G->A | INTERGENIC | None |