Detailed information of SNP:
|
SNP ID:
sf0907886620(Gbrowse)
Chromosome: chr09 Position: 7886620 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 84.46% | 15.54% |
| All Indica | 793 | 93.95% | 6.05% |
| All Japonica | 497 | 67.00% | 33.00% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 208 | 86.06% | 13.94% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907886620 | C->T | INTERGENIC | None |