Detailed information of SNP:
|
SNP ID:
sf0907911674(Gbrowse)
Chromosome: chr09 Position: 7911674 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.01% | 10.99% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 81.29% | 18.71% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907911674 | C->T | INTERGENIC | None |