Detailed information of SNP:
|
SNP ID:
sf0907950531(Gbrowse)
Chromosome: chr09 Position: 7950531 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 70.21% | 29.79% |
| All Indica | 795 | 73.96% | 26.04% |
| All Japonica | 483 | 59.63% | 40.37% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 211 | 43.13% | 56.87% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 325 | 44.00% | 56.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907950531 | C->T | INTERGENIC | None |