Detailed information of SNP:
|
SNP ID:
sf0907951012(Gbrowse)
Chromosome: chr09 Position: 7951012 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 82.64% | 17.36% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 494 | 58.10% | 41.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 333 | 62.16% | 37.84% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907951012 | C->T | INTERGENIC | None |