Detailed information of SNP:
|
SNP ID:
sf0907954125(Gbrowse)
Chromosome: chr09 Position: 7954125 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 74.86% | 25.14% |
| All Indica | 796 | 89.57% | 10.43% |
| All Japonica | 489 | 52.15% | 47.85% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 327 | 72.78% | 27.22% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907954125 | C->T | INTERGENIC | None |