Detailed information of SNP:
|
SNP ID:
sf0907960129(Gbrowse)
Chromosome: chr09 Position: 7960129 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.93% | 41.07% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907960129 | T->C | INTERGENIC | None |