Detailed information of SNP:
|
SNP ID:
sf0907964825(Gbrowse)
Chromosome: chr09 Position: 7964825 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.48% | 21.52% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 495 | 49.70% | 50.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 334 | 46.41% | 53.59% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907964825 | A->G | LOC_Os09g13650(LOC_Os09g13650.3) | INTRON |
| sf0907964825 | A->G | LOC_Os09g13650(LOC_Os09g13650.1) | INTRON |
| sf0907964825 | A->G | LOC_Os09g13650(LOC_Os09g13650.2) | INTRON |