Detailed information of SNP:
|
SNP ID:
sf0907967670(Gbrowse)
Chromosome: chr09 Position: 7967670 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 79.08% | 20.92% |
| All Indica | 797 | 95.23% | 4.77% |
| All Japonica | 495 | 56.97% | 43.03% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 333 | 63.06% | 36.94% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907967670 | G->T | INTERGENIC | None |