Detailed information of SNP:
|
SNP ID:
sf0907969534(Gbrowse)
Chromosome: chr09 Position: 7969534 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 72.98% | 27.02% |
| All Indica | 797 | 96.74% | 3.26% |
| All Japonica | 494 | 30.36% | 69.64% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 333 | 9.31% | 90.69% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907969534 | C->A | INTERGENIC | None |