Detailed information of SNP:
|
SNP ID:
sf0907976858(Gbrowse)
Chromosome: chr09 Position: 7976858 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 82.04% | 17.96% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 493 | 58.01% | 41.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 332 | 55.12% | 44.88% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907976858 | A->G | INTERGENIC | None |