Detailed information of SNP:
|
SNP ID:
sf0907979770(Gbrowse)
Chromosome: chr09 Position: 7979770 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.05% | 35.95% |
| All Indica | 796 | 64.32% | 35.68% |
| All Japonica | 497 | 56.14% | 43.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 211 | 35.07% | 64.93% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 52.84% | 47.16% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907979770 | C->T | INTERGENIC | None |