Detailed information of SNP:
|
SNP ID:
sf0907992257(Gbrowse)
Chromosome: chr09 Position: 7992257 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 90.86% | 9.14% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 491 | 83.71% | 16.29% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 88 | 39.77% | 60.23% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907992257 | T->C | INTERGENIC | None |