Detailed information of SNP:
|
SNP ID:
sf0908027327(Gbrowse)
Chromosome: chr09 Position: 8027327 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 89.47% | 10.53% |
| All Indica | 787 | 81.58% | 18.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 71.31% | 28.69% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908027327 | G->A | LOC_Os09g13720(LOC_Os09g13720.1) | Non-Synonymous SNP |