Detailed information of SNP:
|
SNP ID:
sf0908090687(Gbrowse)
Chromosome: chr09 Position: 8090687 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 77.37% | 22.63% |
| All Indica | 767 | 75.10% | 24.90% |
| All Japonica | 495 | 89.90% | 10.10% |
| Aus | 64 | 6.25% | 93.75% |
| Indica I | 356 | 67.42% | 32.58% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 201 | 75.12% | 24.88% |
| Temperate Japonica | 333 | 87.09% | 12.91% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908090687 | A->G | INTERGENIC | None |