Detailed information of SNP:
|
SNP ID:
sf0908142257(Gbrowse)
Chromosome: chr09 Position: 8142257 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 96.33% | 3.67% |
| All Indica | 797 | 95.23% | 4.77% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908142257 | G->A | INTERGENIC | None |