Detailed information of SNP:
|
SNP ID:
sf0908225638(Gbrowse)
Chromosome: chr09 Position: 8225638 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 92.85% | 7.15% |
| All Indica | 727 | 92.85% | 7.15% |
| All Japonica | 485 | 92.78% | 7.22% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 327 | 89.91% | 10.09% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 193 | 93.78% | 6.22% |
| Temperate Japonica | 327 | 93.88% | 6.12% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908225638 | C->T | INTERGENIC | None |