Detailed information of SNP:
|
SNP ID:
sf0908234149(Gbrowse)
Chromosome: chr09 Position: 8234149 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 85.78% | 14.22% |
| All Indica | 775 | 78.84% | 21.16% |
| All Japonica | 475 | 94.95% | 5.05% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 362 | 80.94% | 19.06% |
| Indica II | 209 | 85.65% | 14.35% |
| Indica Intermediate | 204 | 68.14% | 31.86% |
| Temperate Japonica | 322 | 95.65% | 4.35% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 61 | 86.89% | 13.11% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908234149 | G->A | LOC_Os09g13980(LOC_Os09g13980.1) | Synonymous |