Detailed information of SNP:
|
SNP ID:
sf0908234271(Gbrowse)
Chromosome: chr09 Position: 8234271 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 90.37% | 9.63% |
| All Indica | 752 | 82.85% | 17.15% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 83.85% | 16.15% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 189 | 75.13% | 24.87% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908234271 | G->A | LOC_Os09g13980(LOC_Os09g13980.1) | Non-Synonymous SNP |