Detailed information of SNP:
|
SNP ID:
sf0908234569(Gbrowse)
Chromosome: chr09 Position: 8234569 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 84.54% | 15.46% |
| All Indica | 733 | 73.67% | 26.33% |
| All Japonica | 491 | 98.78% | 1.22% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 334 | 74.25% | 25.75% |
| Indica II | 209 | 82.78% | 17.22% |
| Indica Intermediate | 190 | 62.63% | 37.37% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908234569 | T->A | LOC_Os09g13980(LOC_Os09g13980.1) | Synonymous |