Detailed information of SNP:
|
SNP ID:
sf0908323423(Gbrowse)
Chromosome: chr09 Position: 8323423 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 94.52% | 5.48% |
| All Indica | 767 | 100.00% | 0.00% |
| All Japonica | 482 | 85.06% | 14.94% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 353 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 202 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 79.19% | 20.81% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908323423 | C->G | INTERGENIC | None |